You have specified two segmentations (an annotation and a segmentation). Just use one (probably the annot). There will be a column for each label in the annot. Use the --ctab-out to get a color table that indicates which column belongs to which region. doug
YUMI MAEDA wrote:
HI, I am trying to get timecourse from each subject within a ROI with GUI as follows, in tksurfer GUI, Tools > timecourse > Write summary of marked vetices/label,
I would like to do it command line, would you tell me what line I can use?
I tried to use mri_segstats --i ./filtered_func_data.nii --subject subj1 --sum ./test_summary --avgwf test_output --annot subj1 aparc lh --seg ./testaseg-in-func.img
the output has 7 columns and does not seems to be timecourse and also it is different from the one that I get when I use GUI as I described above.
thank you very much. YUMI _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer