External Email - Use Caution
Just wondering if you already tried using bash to setup the environment. - R.
%] bashbash-3.2$ export FREESURFER_HOME=/Applications/freesurfer/7.1.1bash-3.2$ source $FREESURFER_HOME/SetUpFreeSurfer.sh Setting up environment for FreeSurfer/FS-FAST (and FSL)FREESURFER_HOME /Applications/freesurfer/7.1.1FSFAST_HOME /Applications/freesurfer/7.1.1/fsfastFSF_OUTPUT_FORMAT nii.gzSUBJECTS_DIR /Applications/freesurfer/7.1.1/subjects bash-3.2$ which freeview/Applications/freesurfer/7.1.1/bin/freeviewbash-3.2$ freeview --help. . . output deleted . . .. . . if that succeeds then see if freeview will open an empty window . . .bash-3.2$ freeview
On Jul 16, 2021, at 17:33, Sahil Bajaj <sahil.brain@gmail.com> wrote: External Email - Use Caution Hi RuopengThanks for your quick response.If I use that I still get the similar error: BT136080:~ bajsah$ $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeviewSegmentation fault: 11Segmentation fault: 11SahilOn Fri, Jul 16, 2021 at 1:23 PM Wang, Ruopeng <RWANG4@mgh.harvard.edu> wrote:What if you run:$FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview -f fsaverage/surf/lh.inflated> On Jul 16, 2021, at 1:07 PM, Sahil Bajaj <sahil.brain@gmail.com> wrote:> > External Email - Use Caution > > > Hi everyone,> > I am having following error while opening freeview in terminal:> > BT136080:01_Project_FreeSurfer bajsah$ freeview -f fsaverage/surf/lh.inflated> /Applications/freesurfer/7.1.1/bin/freeview: line 2: 27046 Segmentation fault: 11 $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@"> > Somehow, this was working fine a few weeks ago, but I can't open freeview now. I double checked the folder: /Applications/freesurfer/7.1.1/bin/freeview and everything seems to be at place.> > Any suggestions/tips to resolve this, please?> > Thanks a lot !> Sahil> _______________________________________________> Freesurfer mailing list> Freesurfer@nmr.mgh.harvard.edu> MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to behttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer________________... mailing listFreesurfer@nmr.mgh.harvard.eduMailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to behttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurferThe information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://secure-web.cisco.com/1sckFV0ZDHm6jVeKBFeCWBRK8w52ulKng6EPlPnnw6CvPey0...;. If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail. _______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer