Hi Doug,
I am able to get up to the mrs_glmfit step of the Surface Based Group fMRI Analysis, but it does not indicate how a comparison should be made between the two groups that I have. It only gives information on how to perform a one sample group mean test (osgm). In addition, when you mention using a mrs_glmfit-sim command, does this also generate cerebrovascular reactivity values, or does it only provide cortical thickness values? I was also hoping that I could potentially visualize an average area of low BOLD CVR for both groups. Is that possible?
Thanks, Arsenije