I mean to just load the orig.mgz into tkmedit and see if it is oriented correctly. Assuming that it is oriented correctly, then it sounds like the talairach transform is messed up pretty badly. When you run tkregister2, try adding --regheader. This will ignore the info in the talairaach.xfm file and force it to use the geometry info. it will likely be very far off, but the basic orientation should be ok.
Chacko Cherian wrote:
It has the problem in tkmedit,after I load the transform..i checked brainmask.img and T1.img after loading the transform and they had this problem..The header and geometry info look fine..
--- Doug Greve greve@nmr.mgh.harvard.edu wrote:
That means that the geometry info in the file is messed up. Where did the data come from? Are the dicoms messed up too?
Chacko Cherian wrote:
No, It has the same problem in tkmedit too.
--- Doug Greve greve@nmr.mgh.harvard.edu wrote:
Does it view correctly in tkmedit?
Chacko Cherian wrote:
Hello ALL,
Has anybody had trouble with tkregister2..I
loaded
the
transform and the coronal and horizontal views
are
mixed up.Coronal view of the subject is coupled
with
the horizontal view of the talairach volume.
Thanks in advance Regards,
Chacko.
TV dinner still cooling? Check out "Tonight's Picks" on Yahoo! TV. http://tv.yahoo.com/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
In order to help us help you, please follow the steps in: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Never miss an email again! Yahoo! Toolbar alerts you the instant new Mail
arrives.
http://tools.search.yahoo.com/toolbar/features/mail/
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
In order to help us help you, please follow the steps in: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Never miss an email again! Yahoo! Toolbar alerts you the instant new Mail arrives. http://tools.search.yahoo.com/toolbar/features/mail/