Re: [Freesurfer] InfantFS - resampling asset to native space

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Hi Everyone,

I am reposting this from December 1st since it hasn’t been shown up in the archive.

Dear FreeSurfer Developers,

We are using InfantFS and noticed that after running recon-all ("infant_recon_all --newborn --s ${SUBJ}”) , the voxel size changes to 1*1*1. I know that using "mri_label2vol --seg aseg.mgz --temp rawavg.mgz --o aseg-in-rawavg.mgz --regheader aseg.mgz” we can convert the aseg output of adult FreeSurfer to native space. Is there any similar command to do so for infants?

I wanted to try “mri_label2vol” , however there is no rawavg.mgz file in the mri folder of infant subjects.

Thanks in advance, Fateme