Hi Antonin
the reason we didn't answer your post about the reposition tool is that it is really under development and for internal use only. You are welcome to try it out, but we don't have the bandwidth to support it at the moment.
cheers Bruce
On Mon, 9 Jan 2017, Antonin Skoch wrote:
Dear Paul, you can also try to play with "reposition surface" tool in freeview, where y ou (apart from other options) can directly edit coordinates of the surface v ertices. However, this tool is not well documented and I myself would like to know th e significance of some of the parameters - see my unanswered post from 4th j anuary 2017: http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg50759.html And, I am not sure how this works in 5.3 version of freeview, I have used it only in V6beta (dev) version. Regards, Antonin I think this problem is fixed in 6.0 (if and when we get it out) On Mon, 9 Jan 2017, miracle ozzoude wrote:
Thanks bruce for your response. I accidentally listed number 3 twice instead of 4. Here's my 4th question: Which of the mris_make_surfaces can I use to correct the pial surface when it does cross the white matter and also, which is helpful with white matter surface extension? Please see attached screenshot. I came across a post with similar error in the forum and you diagnosed but it wasn'tfix https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2016-April/045097 .html Best, Paul