20 Feb
2014
20 Feb
'14
3:57 p.m.
If you upload these files for me, I can check what's going on: yourDWIs.nii.gz your.ecclog your.bvals
You can upload them for me here: https://gate.nmr.mgh.harvard.edu/filedrop2/
On Thu, 20 Feb 2014, Gerit Pfuhl wrote:
tried adopted version of
dmri_motion --dwi yourDWIs.nii.gz --mat your.ecclog --bval your.bvals --out output.txt
as well as trac-all -qa -c dmrirc_file with location of bval specified and trac-all -prep -c, respectively
On 20 February 2014 21:16, Anastasia Yendiki ayendiki@nmr.mgh.harvard.edu wrote:
Then it's no surprise that the error doesn't occur in 5.2, because 5.2 doesn't run dmri_motion at all. When you run dmri_motion on the command line, do you use the same syntax as the one you're showing below? On Thu, 20 Feb 2014, Gerit Pfuhl wrote: yes, it happens at trac-all -qa after loading the *.nii file (see attachment) or when run as dmri_motion --dwi dwi_orig.nii.gz --mat dwi.ecclog --bval dmri/bvals --out dwi_motion.txt immediately. On 20 February 2014 17:08, Anastasia Yendiki <ayendiki@nmr.mgh.harvard.edu> wrote: Does the error in trac-all -prep with 5.3 occur when dmri_motion is run or at a different step? On Thu, 20 Feb 2014, Gerit Pfuhl wrote: Dear Tracula Experts, after careful checking we still cannot run trac-all -qa or dwri-motion as the command always returns: could not open bvals but the same file is flawlessy opened/retrieved in version 5.2. [cat bvals is fine, trac-all -prep in 5.2. runs fine, trac-all -prep in 5.3 returns could not open bvals] Kind regards Gerit Pfuhl The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.