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Hi FreeSurfer experts,
Just checking whether anyone has any advice on my query below?
I would greatly appreciate any advice regarding how to incorporate masks/pial edited in v6 into the v7 pipeline.
Thanks and best wishes, Amanda
From: Amanda Boyes Sent: Thursday, 16 September 2021 4:37 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Migrating data from v6 to v7
Hi fellow FreeSurfer users,
I am part of a longitudinal project and have a large dataset that has been processed in v6.
I have now upgraded to v7 and would like to update my processed data, retaining the existing manual masks and pial edits.
I found an old ReconAllChanges page (January 27, 2006, last updated 2012) referring to this as a “legacy data set” https://secure-web.cisco.com/1Xv4IBldXeMiwS_vnz2yxkzZjRrmjWqdrWlH8BEGlfzEpFP...
I have also found a recon-all wiki page (https://secure-web.cisco.com/1nvZmuBoQ85ubAmAW6yY6sLfuFWqvMeZLmQkdE8XLYxKLAN... last updated 2017) suggesting the use of the following command for legacy datasets: recon-all -subject subjectname -all -legacy
Unfortunately, the -legacy flag is not recognised in v7.
I would be grateful for any advice on how to update my existing data from v6.0.0 to v7.2.
Thank you in advance, Amanda
Amanda Boyes My pronouns are she/her/hers PhD Candidate and Research Assistant (Youth Mental Health) Thompson Institute USC Tel: +61 7 5456 3886 amanda.boyes@usc.edu.aumailto:amanda.boyes@usc.edu.au | usc.edu.auhttp://secure-web.cisco.com/1MXZYXJXy8iHW-LYUUBoJn5HJbx46hx1sH8sxyHDFXKjdD4t4VGpIk4YUOsBb_mDcUQzBtbpCn9kvciB9dn2lzZLev1df7ZjJB1WLd7PFAMpjtg255IDmVzQTvPxK3EdTioCe__x49I1MLWHlBZmy4CWtAS0rkH9lOjCvVzPSoClyqHwSai6zuJ12FaGezHiLaohCuKtykQ9qz9grwi6NPgw6hpBG-NvBJvdXlY6zb1sYGbm7yf0oydA5GfLDqw-C8pe3QBEXjyGe7qR4jWRbBg/http%3A%2F%2Fwww.usc.edu.au%2F [Logo, company name Description automatically generated] I acknowledge the Traditional Custodians of the lands and waters upon which the University’s campuses are located. I acknowledge their continuing connections to country and pay my respects to Elders past, present and emerging.
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