You need to tell recon-all what to do. Try adding -all at the end On Nov 11, 2021, at 10:33 PM, a Chinese reader hbszhangxia@163.com wrote:
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Hello FreeSurfer Developers,
I'm attempting to compute the thickness of the grey matter ,but for some of my subjects I get the following error when I run the recon-all -s <> -all command:
Checking for (invalid) multi-frame inputs... WARNING: only one run found. This is OK, but motion correction cannot be performed on one run, so I'll copy the run to rawavg and continue.
I've searched the list and no similar errors have been reported. Did this warning have any effect for my outcome?And why my lh.thickness cannot generated? Does anyone have any thoughts on how to trouble-shoot this one? Also, Ive attached the recon-all.log in case it's of any use.
Best regards, Zhang Xia
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