Daniel,
What operating system are you on? If your using MacOS, you must have XQuartz installed in order to use the the Tkregister2/Tksurfer/Tkmedit tools. Check the Application->Utilities folder to see if its already installed. If not, you can download it from here:
http://xquartz.macosforge.org/landing/
If your are on Linux than I am sorry but someone else will have to chime in with a potential solution.
-Zeke
Hello freesurfers, I just ran registration of my functional images and am trying to visualize the registration for assessment. However, when I use the commands "tkregister-sess -s $SESSIONNAME -d $SESSIONDIRECTORY -fsd bold -funcstem f" or
"tkregister2 --targ T1.mgz --fstarg --s $SUBJECTID --surf --mov $FUNCTIONAL_MRI --reg $REG_DAT --plane sag --movbright $MYBRIGHTNESS"
the command gets stuck on "Opening window SUBJECT01".
I've also tried just opening tksurfer and tkmedit but the terminal produces no output/windows opening and simply freezes.
Any ideas to why this could be occurring? I've let it sit at this stage for multiple hours without anything popping up and without any errors.
Thanks!
Daniel
-- Daniel Cole University of Rochester Brain and Cognitive Sciences dcole10@u.rochester.edu _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer