Hello,
I am running into the following error when I try to run trac-all:
set: No match. ERROR: must specify as many DWI dicoms as subjects
I have taken my script and examined it line by line and have made several attempts at debugging it.
I was wondering if you had any suggestions? Attached is my dmrirc_single_subject configuration.
I am brand new to freesurfer and tracula and would appreciate any guidance you can give me!
Thanks!
Emily
----- Original Message ----- From: "Anastasia Yendiki" ayendiki@nmr.mgh.harvard.edu To: ebelleau@uwm.edu Cc: freesurfer@nmr.mgh.harvard.edu Sent: Thursday, October 10, 2013 3:53:29 PM Subject: Re: [Freesurfer] Tracula
Hi Emily - The first version of tracula was in freesurfer 5.1. However, I would *highly* recommend using the newer version of tracula, now in 5.3, as it has improvements in both performance and speed.
The processing in trac-all is supposed to happen in parallel for each of the subjects included in the configuration file, if you run trac-all on a cluster. However, not all clusters have the same set-up, and you may have to make modifications for it to work on your cluster, with the help of your cluster admins. There should be previous questions on this in this list's email archives. Let me know if you have any other questions.
a.y
On Thu, 10 Oct 2013, ebelleau@uwm.edu wrote:
----- Original Message ----- From: ebelleau@uwm.edu To: freesurfer@nmr.mgh.harvard.edu Sent: Thursday, October 10, 2013 3:14:06 PM Subject: Tracula
Hello,
I had a question regarding batch processing in trac all.
When you batch process and put in multiple subjects in your subject list in your configuration file, are the subjects run parallel or serial?
Also, I am having a hard time finding the linux version of tracula that is compatible with Freesurfer version 5.0 (assuming it exists)?
Thank you so much and I appreciate your guidance as I am brand new to freesurfer and tracula.
Emily _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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