Hi all, I am trying again to perform Surface-based Interhemispheric Registration in another computer (same version of FS 5.0) and by building my own atlas. However, there is an error while running xhemireg command (please find the log attached).
I also noted that the command xhemireg took a lot of time to run (more than 30 min) while you wrote on the wiki that it would take a few minutes to finish.
If anyone can give some hints it would be great
thank you
Angela
I'm not sure why this is failing. Are there other things in the xhemi folder? What version of FS are you using? doug
On 07/01/2014 11:06 AM, angela.favaro@unipd.it wrote:
sure! thank you
Can you send the log file (or the full terminal output)? On 06/30/2014 03:11 PM, angela.favaro@unipd.it wrote:
Hi all, I have a problem with 'Surface-based Interhemispheric Registration'
I followed the instructions and all seem to work, but the command: 'surfreg --s $subject --t fsaverage_sym --lh --xhemi'
finish with the error below (indeed in the xhemi/label directory, there is no file)
What can I do? Thank you for any help! Angela
#@# Cortical Parc rh Mon Jun 30 17:44:52 CEST 2014 /Users/angelafavaro/Desktop/risonanze/studyfree/subj024/xhemi/scripts \n mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 subj024/xhemi rh ../surf/rh.sphere.reg /Applications/freesurfer/average/rh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ../label/rh.aparc.annot \n No such file or directory mris_ca_label: could not open label file ../label/rh.cortex.label No such file or directory
No such file or directory Darwin host-001.homenet.telecomitalia.it 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386
recon-all -s subj024/xhemi exited with ERRORS at Mon Jun 30 17:44:52 CEST 2014
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer