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Hi Eugenio,
I want to export the volumnes of all subjects, I used the quantifyHippocampalSubfields.sh command and apparently it did work but now I can´t find where Freesurfer saved the file.
Here is the response of Freesurfer
rmnlab1:~ neucoga$ quantifyHippocampalSubfields.sh T1-T2_3D_SAG pruebahipocampo.txt /Applications/freesurfer/subjects Gathering results from subjects in: /Applications/freesurfer/subjects Using the suffix name: T1-T2_3D_SAG And writing them to: pruebahipocampo.txt
I looked for it in the subjects folder but I can not find the file anywhere.
Thanks in advance
2018-05-29 10:34 GMT+02:00 Iglesias Gonzalez, Eugenio e.iglesias@ucl.ac.uk :
External Email - Use CautionHola Miguel Ángel,
What do you mean by exporting? The volumes? There is a command to gather the volumes from all subjects in the subjects directory, which is:
quantifyHippocampalSubfields.sh (in FreeSurfer 6.0)
quantifyHAsubregions.sh (in dev version)
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
ERC Senior Research Fellow
Centre for Medical Image Computing (CMIC)
University College London
*From: *freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Miguel Ángel Rivas Fernández miguelrivasfdez@gmail.com *Reply-To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Date: *Tuesday, 29 May 2018 at 09:32 *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject: *[Freesurfer] Command to export hippocampal subfields segmentations
External Email - Use Caution *Hi Freesurfer developers,
I was looking for the freesurfer command to export hippocampal sufields segmentations but I did not found. What is the command to export this measures and in what folder are exported the file?
Thanks a lot.
Best,
--
*Miguel Ángel Rivas Fernández*
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