Hi Bruce,
Thank you for answering.
Not, it is not a bug...in fact recon-all...-all had not problems. Just I was looking at the outputs...and as I am running FreeSurfer for my first time I wanted to ask about if this was a problem or I can go on....
Where I should upload the subject and which files? I mean, in order to do not overload the mail list...
Kind regards, Rosalia
2017-11-21 18:09 GMT+01:00 Bruce Fischl fischl@nmr.mgh.harvard.edu:
hmmm, that is odd looking. Can you upload that subject so we can see if it is just a display bug or not? On Tue, 21 Nov 2017, Rosalia Dacosta Aguayo wrote:
Dear FreeSurfer Developers,
I am checking the OutputData_freeview after running recon-all following
your
tutorial: https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/OutputData_freeview
I have loaded T1.mgz, wm.mgz, brainmask.mgz and aseg.mgz, and then the surfaces: rh.pial, rh.white, lh.pial and lh.white.
In general, I did not see any problem...but when I wanted to see the surface&mesh with vertices I saw something estrange I do not know if it
is a
problem or it is normal (see the vertices in the temporal pole in grey scale)...as this is my first run with FreeSurfer. I attach you the image.
- FreeSurfer version:
freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c 2. Platform: CentOS release 6.7 3. uname -a: Linux rosalia-PORTEGE-Z930 4.4.0-98-generic #121-Ubuntu SMP
Tue
Oct 10 14:24:03 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux 4. Recon-all.log; see attached (although it ended without errors)
I haven't come across this error in my searches, but I may be using the wrong key terms. Would anyone be able to point me in the right direction
or
trouble-shoot fixing this?
Thank you for your time, Rosalia
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