Re: [Freesurfer] Surfaces without segmentation

Hi Sean

none of these things are easy to do. Unless you have a compelling reason you are better off letting recon-all do it's thing. Otherwise you will send lots more person time fixing things that it would have gotten right if you had let it

cheers Bruce On Fri, 2 Dec 2016, Hatton, Sean wrote:

Hello,

We are just interested in generating the white and pial surfaces without segmentation.

1. Are there additional switches for running mris_make_surfaces without aseg

(for -white section) or apar.annot (for -pial section)? 2. We would like to control intensity values - can we specify tissue class cutoffs in mri_normalize and mri_ca_normalize?

Regards,

Sean Hatton, PhD Postdoctoral Scholar, Department of Psychiatry UC San Diego