How does the annot look on the surface (ie, intksurfer)? What is the full terminal output of mri_label2vol?
On 06/28/2013 10:19 AM, LAOUCHEDI MAKHLOUF wrote:
Hi i run mri_label2annot to get individual annot files for all labels, then i run mri_label2vol to get nifti volumes of my labels using the following command : mri_label2vol --annot lh.G_and_S_cingul-Ant.annot --temp SUBJ_DIR/ctr2/mri/brain.mgz --subject ctr2 --hemi lh --identity --fillthresh .5 --o ~/lh.G_and_S_cingul-Ant.nii.gz --proj frac 0 1 .1
but the result is a volume with zero values (i changed --fillthresh .5 to --fillthresh 0 and i got the same probleme)
Thanks
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