I am able to run AFNI normally, it was just an issue with this particular command. I did however figure out a solution, which was just that I needed to use v5.3 instead of 5.2. I'm not sure if it's just our copy here that's outdated, but as soon as I loaded 5.3, I ran the same command I was trying before, and it ran appropriately, as well as the following spmregister command. I did not even know that we had the newest version since 5.2 was the default module on our systems.
Best, Adam
On Thu, Jun 5, 2014 at 11:43 AM, Douglas Greve greve@nmr.mgh.harvard.edu wrote:
Well, if you can't run any AFNI program, then that is the problem. doug
On 6/5/14 11:37 AM, Nitenson, Adam wrote:
Hi Doug,
Unfortunately that did not seem to work. I am normally able to run other AFNI programs on this computer (it's what I've been normally performing my data analyses with).
Best, Adam
On Wed, Jun 4, 2014 at 12:02 PM, Douglas N Greve < greve@nmr.mgh.harvard.edu> wrote:
Do the other programs in AFNI work on that computer? If 3dvolreg works, then copy that to 3dvolreg.afni in $FREESURFER_HOME/bin
doug
On 06/03/2014 12:01 PM, Nitenson, Adam wrote:
Hi all,
I'm running version 5.2 off-site, and I keep running up against an error for preproc-sess. From my SUBJECTS_DIR, I am running
preproc-sess -fsd bold -s 608_Sess1 -fwhm 5 -per-run
which provides the following error:
3dvolreg.afni: symbol lookup error: 3dvolreg.afni: undefined symbol: afni_ncerr ERROR: 3dvolreg.afni Invalid null command.
I found this old communication
https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg28736.html
in which this user had the same problem. I found 3dvolreg.afni in the Freesurfer "bin" folder and copied to to my AFNI folder, but I still get the same error when running preproc-sess, even with 3dvolreg.afni now in the AFNI cluster.
Any idea what the problem might be?
Best, Adam Nitenson
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