Hello,
The following command has produced a very wrong registration and a warning:
bbregister --mov epi.template.strange_G-W_contrast.nii --bold --s D06 --init-fsl --reg register.strange_G-W_contrast.dat **** WARNING: initial G-W contrast is negative, but expecting positive. If the mov data has a T1 contrast, re-run with --T1 **** The file epi.template.strange_G-W_contrast.nii is BOLD fmri data, not T1-weighted data. As far as I can tell, it is a typical BOLD fmri volume. Any ideas?
Thank you, Kathleen