Hi Jack,
You can specify the .stats file created. Here is an example from the script I use.
Anyone, correct me if this is wrong!
Tara
mris_anatomical_stats -l ${subject}/label/lh.frontalmerge.label -f ${subject}/stats/lh_frontal_surface.stats ${subject} lh pial
aparcstats2table --hemi lh \ --subjects sub1 sub2 sub3 \ --meas thickness \ --parc lh_frontal_surface \ --tablefile lh.frontal_thickness.stats.txt
----- Original Message ----- From: "Jackie Lam" jackie.lam@mail.mcgill.ca To: freesurfer@nmr.mgh.harvard.edu Sent: Thursday, October 3, 2013 12:51:21 PM Subject: [Freesurfer] aparcstats2table for manually drawn ROIs
Hi there,
So I've run recon-all on my group of subjects, ran them in QDEC, manually drawn my ROIs, used mris_anatomical_stats to create a .stats files for each subject from my hand drawn ROIs and now I want to use aparcstats2table to gather the thicknesses from all my subjects.... Is there an option to gather stats from a particular .stats file rather than from just the two parcellation atlases? I think there is something similar in asegstats2table (--stats=lh.xxx.stats), but is there something like that for aparcstats2table?
Many thanks,
Jack _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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