Yes, it's for a permutation test. Your fix seems to have solved the problem. No more errors so far.
Thanks again. Georg
-----Ursprüngliche Nachricht----- Von: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] Im Auftrag von Doug Greve Gesendet: Montag, 1. Juni 2009 01:46 An: Georg Homola Cc: freesurfer@nmr.mgh.harvard.edu Betreff: Re: [Freesurfer] mri_glmfit-sim bug?
Is this for a permutation test? Sorry, this is my fault. I've put a new version here ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_glmfit-sim that should fix the problem. Can you test it out?
thanks
doug
On Mon, 1 Jun 2009, Georg Homola wrote:
Hi All (and especially Doug, again)!
As one of the final steps I run mri_glmfit-sim for clusterwise correction (of my random effects analysis btw.). It always worked well and I also didn't change the command line recently, but since I updated Freesurfer to the latest version (4.3.1) it quits with:
ERROR: you must supply --fwhm with --sim, even if it is 0
There is no flag like --fwhm for mri_glmfit-sim and when I try --fwhm-override it won't change anything. Am I missing something?
Thanks Georg
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