[Freesurfer] Re： Re：segmentHA_T2.sh

-- Juan Eugenio Iglesias ERC Senior Research Fellow Centre for Medical Image Computing (CMIC) University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of 墨初 530337973@qq.com Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Wednesday, 18 July 2018 at 10:15 To: freesurfer freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Re：segmentHA_T2.sh External Email - Use Caution hello， I think RAM is enough。my computer is imac pro.There is 16G DDDR3. This process takes up about 1-2G. The total RAM occupied is 5G. Thanks Fiona Ding. ---------------- External Email - Use Caution Weird! Maybe you ran out of RAM memory? -- Juan Eugenio Iglesias ERC Senior Research Fellow Centre for Medical Image Computing (CMIC) University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ From: <freesurfer-bounces at nmr.mgh.harvard.edu> on behalf of 墨初 <530337973 at qq.com> Reply-To: Freesurfer support list <freesurfer at nmr.mgh.harvard.edu> Date: Tuesday, 17 July 2018 at 13:40 To: freesurfer <freesurfer at nmr.mgh.harvard.edu> Subject: [Freesurfer] segmentHA_T2.sh External Email - Use Caution Dear freesurfer experts, when i run the command“segmentHA_T2.sh subject001 T2.nii T2 1” ,it runs as following: -------------- Making Left-Thalamus-Proper map to reduced label 10 -------------- Making Left-choroid-plexus map to reduced label 11 -------------- Making Left-VentralDC map to reduced label 12 -------------- Making Left-Accumbens-area map to reduced label 13 -------------- Making Unknown map to reduced label 14 Computing hyperparameters for estimation of Gaussians parameters znzreadInt: znzread failed No such file or directory Estimating typical intensities of molecular layer and alveus numberOfLabels: 2 Rasterizing mesh...here: 2 here2: 2 done Smoothing mesh collection with kernel size 1.500000 ...Smoothing class: 0 Smoothing class: 1 Smoothing class: 2 Smoothing class: 3 Smoothing class: 4 Smoothing class: 5 Smoothing class: 6 Smoothing class: 7 Smoothing class: 8 Smoothing class: 9 Smoothing class: 10 Smoothing class: 11 Smoothing class: 12 Smoothing class: 13 done numberOfImages = 2 Image: 0 Image: 2 Iteration 1 of 7 1 0.00035804 2 0.089592 fianally,it stop here and can't run anymore,no error reported。I didn't know what‘s wrong？ What can i do？ Thanks very much Fiona Ding