4 Mar
2016
4 Mar
'16
4:31 p.m.
Dear. Freesurfer experts.
Hi. How are you?
It might be very naive question.
When using version 4.5.0 I used the command: mkbrainmask-sess -s $SUBJECT -funcstem fmc -df sessdirfile -fsd bold_retino
However under the version 5.3.0, mkbrainmask-sess does not have -funcstem.
May I use -maskstem instead of -funcstem?
If so, after that, I tried: inorm-sess -s $SUBJECT -motioncor -funcstem fmc -df sessdirfile -fsd bold_retino
However, it complains that: ERROR: cannot find /home/jbang/Projects/replay/epi/replay06/bold_retino/masks/brain You may need to run preproc-sess or mkbrainmask-sess to create a brain mask
Could you please help?
Thank you very much.
Best, Ji Won