This may sound incredibly trivial, but try putting a "./" infront of qdec, ie, "-a ./qdec/..."
doug
On 10/04/2013 03:42 PM, Tara Ann Miskovich wrote:
Hi Everyone,
I am having trouble running mris_anatomical_stats on an annotation file produced from my group analysis in qdec.
This is my code, but it seems to want to pull the annotation file from the subject/label directory. Should I just make a copy into everyone's label file?
mris_anatomical_stats -a qdec/lh_5FWHM_trait_anxiety/lh-Avg-pial_lgi-Cor/mc-z.abs.th13.sig.ocn.annot -t ${subject}/surf/lh.pial_lgi -f ${subject}/stats/lh.parietal_lgi.stats ${subject} lh
Thank you! Tara _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer