Dear FreeSurfer experts
I have been trying to do a test with T2/FLAIR for pial surface refinement, with T1 and FLAIR NiFti images for one subject, FS v5.3.
As described in Release Notes i updated the recon-all script in /freesurfer/bin. I have also tried to do the -bbr-init-header .
I used the forllowing commands: 1) recon-all -s [subject_name] -i T1.nii -all (wich ran succesfully.)
2) recon-all -autorecon3 -s [subject_name] -FLAIR FLAIR/flair.nii -FLAIRpial
I have tried this many times the past week, on my MacBookPro and also on my lab computer running on Linux RedHat 6. But I get the "recon-all exited with ERRORS" every time, with the error message "Cannot allocate memory".
I attached the recon-all.log. I also pasted the system information for my computer at the end of this e-mail.
Is there anything I do wrong in the command? Does this process require a more powerful computer than you would need for regular recon-all?
Thank you very much in advance!
Best regards, Eva
lscpu Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 6 On-line CPU(s) list: 0-5 Thread(s) per core: 1 Core(s) per socket: 6 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 44 Stepping: 2 CPU MHz: 2659.928 BogoMIPS: 5319.85 Virtualization: VT-x L1d cache: 32K L1i cache: 32K L2 cache: 256K L3 cache: 12288K NUMA node0 CPU(s): 0-5