Hi Tara,
Did you try to run the recon-all with the randomness flag? If you don't add this flag, your surfaces will not change much with the new recon-all and you'll probably get the same problem again when running LGI.
Let me know if you still have trouble,
Marie
On Aug 22, 2014, at 7:07 PM, Tara Miskovich miskovi2@uwm.edu wrote:
Hi all,
I am getting an error that seems common for people running LGI where it crashes due to a topological defect.
I have run mris_euler_number and everything looks fine. Plus, I went through each slice and made sure the surfaces looked good.
Any advice on any other steps I can take? I have already tried rerunning recon-all.
Thank you! Tara _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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