External Email - Use Caution
I am basically looking for a way to create an average of the labels for the L subcallosal cingulate cortex (SCC) and then make an average of the labels for the R SCC across all subjects and use these 2 average labels as a mask to see if the average label L SCC and average label of R SCC aligns well with with the actual location of the L and R SCC for each individual subject. Do you know of a better way to do this?
On Thu, Apr 20, 2023 at 9:19 AM Huang, Yujing YHUANG43@mgh.harvard.edu wrote:
External Email - Use CautionHi Carlos,
mri_concat concatenates input .mgz files.
The following command will output C.mgz with A.mgz as the first frame, and B.mgz as the second frame, assuming both A and B have only one frame.
mri_concat --i A.mgz --i B.mgz --o C.mgz
I’m not sure that is what you are looking for.
Best,
Yujing
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> *On Behalf Of *Carlos Alcocer *Sent:* Wednesday, April 19, 2023 1:02 PM *To:* Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] creating average labels
External Email - Use Caution *Good afternoon,
I would like to verify that the subcallosal cingulate cortex (SCC) segmentation of my subjects are correct. I want to do this by creating an average label of the left SCC and an average label of the right SCC which I can then map onto each subject.
If I save these labels from each subject as a volume (.mgz) and then run mri_concat on the left SCC labels (.mgz) and then on the right SCC labels (.mgz), would this accomplish my desired goal?
Tks,
Carlos
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