yes, sorry. The subcortical segmentation is early in the processing stream, and pretty much the slowest step.
Bruce On Fri, 1 Jun 2007, Mishkin Derakhshan wrote:
Hi, I am interested in just obtaining the subcortical segmentation labels and not generating surfaces. I would like to do this in as little time as possible and since I am only looking for label volumes (ie. hippocampal volumes) i figured that there must be some steps I can leave out of -autorecon2. Can anyone tell me the flags I should set to get the fastest way to generate these label files? I found: autorecon-all -subcortseg -subjid <subject> on the wiki, but it says this may take 11+ hours to complete so I thought I would just check before I batched things to run. many thanks, mishkin _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer