External Email - Use Caution
Hi, I just wanted to check in on the progress of this thread. Could you let me know if you had the chance to take a look at the scan I sent? I'm unfortunately having the same problem with multiple scans so if I could get some help, I'd really appreciate it. If I somehow failed to send the files please let me know as well. Thank you! Monica
On Fri, Jan 31, 2020 at 11:37 AM Monica Bondy bondy023@umn.edu wrote:
Thank you so much! I just sent the gzipped subject directory *subjectdir.gz. * My main concern is that a lot of the lateral gray matter isn't included. Here are some Talairach coordinates that illustrate the areas I'm concerned about: (-67 -27 -9) (-65 -33 22).
Let me know if it didn't send properly or if I can do anything else.
Thanks again, Monica
On Fri, Jan 31, 2020 at 10:34 AM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Monica
sure, if you tar and gzip the entire subject dir and ftp it to us, then send us a description that includes the voxel coords of where you think things should be more accurate we will take a look
cheers Bruce On Fri, 31 Jan 2020, Monica Bondy wrote:
External Email - Use CautionDear Freesurfer experts, I was wondering if I could get some help with a problem that I keep experiencing. For some of the patients, their gray matter is not
properly
included in the pial surface. I have tried tkmregister and using control points but neither have been successful. I have read on a separate thread that editing the wm.mgz may be helpful
but
could I have some guidance on this please? Also, I know it can be
difficult
to tell the problem based on the description so please let me know if I
can
send something over to help. I'm still very much learning how to work freesurfer so I really appreciate your help. (Note: I am using version 5.3)
Thank you, Monica
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