The slicing (axial or otherwise) should not matter. But if the resolution (voxel size) is not good enough (~1mm), then you might get some blurry results.
On 7/2/18 10:23 AM, Mr. Tass wrote:
Good morning I hope everyone had a gr8 weekend.
im new here so i hope someone can help me understand a little about the right way to use freesurfer in order to calculate the gray matter volume for different areas of the brain and compare the volume between left and right hemisphere.
so far i have freesurfer installed and recon-all a couple of test subjects. and everything seems to be working fine.
i have several subjects with the axial cut MRI. is the axial cut enough to output accurate results? im little concerned as the T1 representation Outputted in FREEVIEW seems a bit fuzzy
im following the below link for my group analysis. https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/VolumetricGroupAnalysis
please if possible to sheld some light on this kind of analysis and if i am on the right track.
thanks alot to you all best regards
Sarah
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