Dear FreeSurfer users, I am a PhD student from Birkbeck University and I am trying to segment some structural images of infants data.
After the classical segmentation done with the ‘-recon all’ function, I am stuck with two issues: 1. How can I add the CSF, the skull and the scalp in my model? I know that with FS you can get just WM and GM. 2. How can I convert the RAS coordinates to MNI ones?
I have been trying to look at these topics on line and on the FreeSurfer website, but I haven’t find anything useful so far.
Many thanks in advance for your help!
Best Regards Chiara
---------------- Chiara Bulgarelli PhD Student, Centre for Brain and Cognitive Development Birkbeck College, University of London
cbulga01@mail.bbk.ac.uk // bulgarelli.chiara3@gmail.com