Hi Mackenzie,
Can you let us know what OS and version you’re running this on?
Thanks, Andrew
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Langan, Mackenzie mackenzie.langan@icahn.mssm.edu Date: Wednesday, February 3, 2021 at 10:31 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Issue with the hypothalamic segmentation
External Email - Use Caution Good Morning,
I have been trying to run the hypothalamic segmentation and get the following error:
aalqadi@athena:/zstore/data/aalqadi/aalqadi/mPFC/data$ mri_segment_hypothalamic_subunits --s S05486
Traceback (most recent call last):
File "/usr/local/freesurfer_dev/freesurfer/python/scripts/mri_segment_hypothalamic_subunits", line 10, in <module>
import freesurfer as fs
File "/usr/local/freesurfer_dev/freesurfer/python/packages/freesurfer/__init__.py", line 8, in <module>
from . import bindings
ImportError: /lib/x86_64-linux-gnu/libcrypt.so.1: version `XCRYPT_2.0' not found (required by /usr/local/freesurfer_dev/freesurfer/python/packages/freesurfer/bindings.cpython-36m-x86_64-linux-gnu.sohttp://secure-web.cisco.com/1hzKok6ieorAQWILbwXrHm4nWv5aGVWrgLXUjICNL0HcYQDptT0fNHU6AOnJE3qXzhl9NRtNMMllRlwPcgtVISVPA9DsJir2pbwpc4pB0rKgOo_wc0yoGtFyiaXPXPRResPg1pGzrgr4u8Ao1pz7izacK37z0ZG3aoldmpUuq7kUqK3wyc40aHRkJp7A41zrUm-ikFytp9N0shHTbuPDQfnmsIvxVlN5ohXYytZXde24kCCukWp5zEZbAtWoVD6A8g0X2TtrYVzai92-jQmruSg/http%3A%2F%2Fbindings.cpython-36m-x86_64-linux-gnu.so%2F)
We installed the development version of freesurfer to see if that would work to run this, but that didn't work. We then installed XCRYPT_2.0 but still got the same error. We have two versions of python on our machine which we amended to fix the problem, but still get the same error. I am at a loss as to what I should try next to implement this. Any help would be great. Thanks
Best,
Mackenzie