Hi Maria – Can you please run the mri_info command on the same nifti volume on the same computer and let us know what the output is?
a.y
From: <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Maria Economou <meconomou1@sheffield.ac.ukmailto:meconomou1@sheffield.ac.uk> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Date: Wednesday, June 21, 2017 at 11:43 AM To: "freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] TRACULA -prep ERROR
Dear Freesurfer community,
I'm having trouble completing the pre-processing step for TRACULA analysis. I'm using a single NifTi file which I've converted using the original DICOMS, acquired by a PHILIPS scanner. However, I get the following errors in the command line:
dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib
Trace/BPT trap ERROR: input file must be in NIfTI format Darwin dyn143100.shef.ac.ukhttp://dyn143100.shef.ac.uk 15.6.0 Darwin Kernel Version 15.6.0: Thu Jun 23 18:25:34 PDT 2016; root:xnu-3248.60.10~1/RELEASE_X86_64 x86_64
trac-preproc exited with ERRORS at Wed Jun 21 16:22:34 BST 2017
I double-checked my configuration file and everything (bvals and bvecs) looks like is formatted appropriately. I also tried running the command with -i and -s flags, but i get the same errors. Please find attached below the trac-all.log
I would really appreciate any advice as to why it's not working and what I might be doing wrong!
Many thanks, Maria.