Hi Arkadiy
-make all uses the makefile utility to only rerun the processing steps that are needed based on the timestamp of the various files in the subject's dir and a table of dependencies.
cheers Bruce On Mon, 26 Feb 2018, Maksimovskiy, Arkadiy wrote:
Dear Experts,
I was wondering if someone might be able to help me understand what the difference is between the two commands below. It seems that they can be used interchangeably, because I can forsee a situation in which one might not remember which command to run and also have done several types of corrections. Or would the former (-make) method only work on with 1 edits?
Thanks,
Arkadiy
If you cannot remember which command to run, use the -make flag. Recon-all will automatically begin at whichever point in the processing stream you made your edits.
recon-all -make all -subjid <subject>
If you have corrected several types of errors, it is recommended that you re-run recon-all from the beginning, to ensure that none of your edits were left out. (Running from autorecon1 will not save you much time)
recon-all -all -subjid <subject>
--
Arkadiy L. Maksimovskiy, Ph.D.
Postdoctoral Research Fellow McLean Imaging Center, McLean Hospital Department of Psychiatry, Harvard Medical School