Dear Freesurfers
Hi
I was trying to look at the activation in different cortical layers in a single subject.
I ran my preproc-sess command three times, once without using -projfrac flag, once -projfrac 0.5 and lastly -projfrac 0.2
The activation patterns are exactly the same.
My voxel sizes are 1.1*1.1*1.1 .
My question is:
1-Is it normal that the activations do not change at all the more I get closer to white matter?
2-when I use -projfrac 0.2 , does it mean that I am averaging the activation between white matter layer to 0.2 of gray matter layer? Or is it averaging the activation between pial surface to 0.2 gray matter?
I hope my questions are clear.
Thanks
Mona