Hi Developers,
I'm receiving this error while I try to run mri_cvs_register. The same error was received when I reran the same even after increasing the memory allocated to my VB. Can anybody help me with the issue I am facing. Below are the details of my system and software configurations. PFA error log files.
FreeSurfer version: freesurfer-Linux-centos6_x86_ 64-stable-pub-v6.0.0-2beb96c Platform: CentOS7 on VirtualBox
Command Run:
mri_cvs_register --mov bert2
0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Out of memory. This could be due to allocating [0]PETSC ERROR: too large an object or bleeding by not properly [0]PETSC ERROR: destroying unneeded objects. [0]PETSC ERROR: Memory allocated 0 Memory used by process -2147483648 <%28214%29%20748-3648> [0]PETSC ERROR: Try running with -malloc_dump or -malloc_log for info. [0]PETSC ERROR: Memory requested 576224344! [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Petsc Release Version 2.3.3, Patch 13, Thu May 15 17:29:26 CDT 2008 HG revision: 4466c6289a0922df26e20626fd4a0b4dd03c8124 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: surf2vol on a linux-gnu named localhost.localdomain by root Thu Feb 16 09:57:44 2017 [0]PETSC ERROR: Libraries linked from /autofs/space/lyon_006/pubsw/Linux2-2.3-x86_64/packages/petsc/2.3.3-p13/src/petsc-2.3.3-p13/lib/linux-gnu-c-opt [0]PETSC ERROR: Configure run at Tue Aug 10 15:01:59 2010 [0]PETSC ERROR: Configure options --with-debugging=no --with-cc=gcc --with-fc=g77 --download-f-blas-lapack=0 --download-mpich=1 --with-mpi=1 --with-x=0 --with-gnu-copyright-code=0 --with-shared=0 COPTFLAGS=-O3 CXXOPTFLAGS=-O3 FOPTFLAGS=-O3 [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: PetscMallocAlign() line 61 in src/sys/memory/mal.c [0]PETSC ERROR: MatSeqAIJSetPreallocation_SeqAIJ() line 2818 in src/mat/impls/aij/seq/aij.c [0]PETSC ERROR: MatTranspose_SeqAIJ() line 1460 in src/mat/impls/aij/seq/aij.c [0]PETSC ERROR: MatTranspose() line 3500 in src/mat/interface/matrix.c [0]PETSC ERROR: TSolver::setup_load_sym() line 1130 in unknowndirectory/solver.h after setup_load_mfc Linear solve converged due to CONVERGED_ITS iterations 1
Thank You
*Regards,* *Bhavana*
https://www.linkedin.com/in/bhavanaganesh https://www.linkedin.com/in/bhavanaganesh https://www.linkedin.com/in/bhavanaganesh http://bhavanaganesh.weebly.com/