Hi Knut
does the file brain.mgz exist in $SUBJECTS_DIR/004/mri? If so, can you run
ls -l $SUBJECTS_DIR/004/mri/brain.mgz
Bruce
On Thu, 31 Mar 2011, Knut J Bjuland wrote:
i used the following command to repeat a failure output. i used just one subject to get a fast output since my pc is just a core i5 box. make_average_subject --subjects 004 --out test INFO: extension is mgz ERROR: cannot find brain for 004 ERROR: make_average_volume
It appears that the tutorials files are missing some files. which cause my troubles lack the origs below the mri folder.
Knut J
On 03/31/2011 03:40 PM, Bruce Fischl wrote:
and what is the error? On Thu, 31 Mar 2011, Knut J Bjuland wrote:
Hi
I used the followinf commando line optin for make_average_subjects --fsgd gender_age.fsgd --out fsaverage. I have now used chmod -R +w * to add write permission to the dir below. As a matter of fate I ran make_average_subject --subjects 004 --out test and got the same error as before.
Knut J
On 03/31/2011 03:16 PM, Bruce Fischl wrote:
can you run ls -l to check that that file exists and you have permission to it? Also, we need the command line you ran and the error you got in order to help you.
cheers Bruce On Thu, 31 Mar 2011, Knut J Bjuland wrote:
I have added a subject to the to the groups of subject that was available for the qdec tutorials. with this in mind I have used make_average_subject and I have now 41 subject. But when I run this command there is always a subject for which it can not find brain. I am positive that the necessary files are available. The subject that I have add is anonymous mri picture that i have imported into freesurf, and the subject is 20 years old female.
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