We use:
mri_convert N1029-anat+orig.BRIK freesurfer/mri/orig/001.mgz
where freesurfer is our freesurfer subject folder.
On Mon, Jun 3, 2013 at 1:18 PM, Douglas N Greve greve@nmr.mgh.harvard.eduwrote:
what is your mri_convert command line?
On 06/03/2013 02:11 PM, Erin Browning wrote:
Hi everyone--
We have a series of scans with an hyperintense artifact cutting through the temporal and frontal lobe. When we run mri_convert to convert from AFNI .BRIK files to .mgz fles, the results look like the attached image.
How can I correct for this? We tried skullstripping in AFNI first to remove some of the artifact, but that didn't seem to help very much.
Thank you, Erin Browning
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