Hi Saurabh
I didn't realize you meant the subfields. For that you'll need Koen or Eugenio to answer.
You are probably seeing the cc in freeview because that is the default slice it shows, but you should be able to scroll around and see other stuff
cheers Bruce On Fri, 28 Feb 2014, Saurabh Thakur wrote:
Thanks for such quick reply Bruce,
I am saying i am using these file , referring to feesurfer website.
cd $SUBJECTS_DIR/bert/mri freeview nu.mgz -p-labels posterior_left_* posterior_Left-Hippocampus.mgz -p-labels posterior_right_* posterior_Right-Hippocampus.mgz -p-prefix posterior_ -p-lut $FREESURFER_HOME/FreeSurferColorLUT.txt
which contains nu.mgz, posterior_Left-Hippocampus.mgz ,posterior_Right-Hippocampus.mgz
when i am using aseg.mgz i am seeing corpus collosum in free viewer, why is it so...? And I will try to use commands which u referred and get back to you.
cheers Saurabh Thakur,
On Fri, Feb 28, 2014 at 6:44 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Saurabh
I'm not sure what you mean by "the main volume", but the hippocampus is segmented in the aseg.mgz. You can extract it from there using mri_extract_label or mri_binarize --match cheers Bruce On Fri, 28 Feb 2014, Saurabh Thakur wrote: Hello Freesurfer expert, I have done Hippo campus segmentation using Freesurfer. Can u tell me how to extract the only Hippo campus volume from nu.mgz Why only nu.mgz is used for the main volume--is there some specific reason to use? Thanks in advance , Saurabh Thakur,The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.