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TO: freesurfer@nmr.mgh.harvard.edu FROM: 1913191@mail.nankai.edu.cn SUBJECT: recon-all -autorecon1 error: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050)
Hello FreeSurfer Developers,
I'm trying to run the command: recon-all -subjid <subname> -autorecon1. I'm getting the an error message and the error log reads as follows: error: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) Then I run the command: recon-all -subjid <subname> -autorecon1. I get the same error as before. Finally, I run the command: tkregister2 --s subjid --fstal. But I am new to Freesurfer so I can't get the meaning of the output after running that command. How do I know if this is true？I‘ve attached the tkregister2.png and the recon-all.log in case it's of any use. 1) FreeSurfer version: freesurfer-darwin-macOS-7.2.0 2) Platform: MacOS release 10.15.7 (Catalina) 3) uname -a: Darwin zsilencedeMacBook-Pro.local 19.6.0 Darwin Kernel Version 19.6.0: Mon Aug 31 22:12:52 PDT 2020; root:xnu-6153.141.2~1/RELEASE_X86_64 x86_644) recon-all.log: see attached 5) tkregister2.png: see attached Thanks.
