Thank you so much Dr. Doug! I just have one more question:
Now I want to compute the same information for our second modality (i.e., mean and std intensity of different HP_subfields for our additional scan, e,g., T2 or FLAIR). My question is that how could I use <analysisID>.FSspace.mgz (in mri folder) and T1_to_<analysisID>.v10.Ita (in transform folder) files in mri_segstats command?
Thank you in advance for any help. Best regards, Alireza
On Feb 24, 2017, at 10:51 AM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
The basic command is
mri_segstats --seg seg.mgz --default-ctab --sum sum.dat --i input.mgz
where seg is the hippo sub field seg and input is the input where you want to get the intensities from (probably norm.mgz). Note that you need to use the hipp sub field output that is 1mm (not the high res one)
On 02/24/2017 09:53 AM, ali reza mohammadi nejad wrote: Dear FreeSurfer Experts, I want to compute some intensity information (e.g., mean and std) of each Hippocampal subfields (similar to aseg.stats file). I think one option could be mri_segstats command, but I am not sure. If it works, what are the inputs of this command?
Thank you in advance for any help. Alireza
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