Hi All,
We have some subjects who have both wm errors and gm errors.
Is the following workflow possible
Step 1) control points for the white matter edits. DONT RUN recon-all
Step 2) add the pial surface edits. DONT RUN recon-all
Step 3) Run recon-all to incorporate control points for wm edits (recon-all -autorecon2-cp -autorecon3 -subjid cp_before)
AFTER step 3 is COMPLETE, run
Step 4) Run recon-all to create a fixed pial surface (recon-all -autorecon-pial -subjid pial_edits_before)
OR
Can step 3 and Step 4 be run together as recon-all -autorecon2-cp -autorecon-pial -autorecon3 -subjid cp_before
Please let me know.
Thanks
Ri