Nick, Im just running one sample of an Analyze format image..freesurfer is installed on a Linux OS Centos4 platform..but its a 32-bit machine. the sample bert is displayed correctly... im using tksurfer to display lh.orig and rh.orig.. Nick,could this be the problem..im using a 32-bit machine but i ve downloaded the freesurfer-Linux-centos4_x86_64-stable-pub-v3.0.3-full.tar.gz version..
Regards
Chacko. --- Nick Schmansky nicks@nmr.mgh.harvard.edu wrote:
Chacko,
What freesurfer distribution is being used and what platform is it installed upon?
In tksurfer, does the sample subject named 'bert' display correctly?
I guess I don't know what you mean by not tesselating correctly and not displaying the volume correctly. What tool is being used to display lh.orig or rh.orig? tksurfer? or are you refering to the surface outlines as shown in tkmedit?
Nick
No, the nofix surfaces are also displaying just a small piece of the surface..similar to the ?h.orig surfaces.
--- Bruce Fischl fischl@nmr.mgh.harvard.edu
wrote:
hmmm, looks okay. Can you see the ?h.orig.nofix surfaces okay? On Thu, 22 Jun 2006, Chacko Cherian wrote:
--- Bruce Fischl fischl@nmr.mgh.harvard.edu
wrote:
can you send us the recon-all.log file? On Thu, 22 Jun 2006, Chacko Cherian wrote:
yes the filled.mgz is fine...with the
hemispheres
distinctly labelled and no cerebellum.
--- Bruce Fischl fischl@nmr.mgh.harvard.edu
wrote:
> and does the filled.mgz look correct? Are
the
> hemisphere separately > labeled and the cerebellum gone? Also,
please
post
> these to the list so > other people can answer! > > Bruce > > > On Thu, 22 Jun 2006, Chacko Cherian wrote: > >> Yes when I load the image in tkmedit I odnt
have
> any >> problems.Its perfectly clear and > coronal,horizonatal >> and sagittal are all correct. >> >> --- Bruce Fischl
> wrote: >> >>> when you load it in tkmedit does it
display
>>> properly? That is, is the >>> coronal view really coronal? >>> On Thu, 22 Jun 2006, Chacko Cherian wrote: >>> >>>> Hello all, >>>> I ran an Analyze format image in > Fresurfer...just >>> the >>>> Morphometry and reconstruction
tutorial..but
> found >>>> that it's creating a filled.mgz volume
but
I'm
>>> having >>>> a problem in tesselating and creating the > outputs >>>> lh.orig and rh.orig for the left and
right
>>>> hemispheres.It displays a very tiny piece
of
the
>>>> volume. >>>> Could you please let me know how to
troubleshoot
>>> this >>>> problem.. >>>> THanks in advance. >>>> >>>> Chacko. >>>> >>>> >>>> >>>> Chacko Cherian >>>> M.S EE >>>> Graduate Assistant >>>> Department of Psychology >>>> Arizona State University. >>>> Tempe,AZ. >>>> >>>> >>>> >
>>>> Do You Yahoo!? >>>> Tired of spam? Yahoo! Mail has the best
spam
>>> protection around >>>> http://mail.yahoo.com >>>>
>>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> >>> >> >
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>> >>>> >>>> >>> >> >> >>
>> Do You Yahoo!? >> Tired of spam? Yahoo! Mail has the best
spam
> protection around >> http://mail.yahoo.com >> >> >> >
Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam
protection around
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam
protection around
Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam
protection around
http://mail.yahoo.com _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
=== message truncated ===
__________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com