Dear Anastasia,
Thanks a lot for the upload. The procedure now runs perfectly, except for that last message at the end of trac-all -path :
Merging volume 18 of 18... Threshold: 68.1 Name: Right Uncinate Fasciculus dmri_mergepaths(26008) malloc: *** mmap(size=18446744073709543424) failed (error code=12) *** error: can't allocate region *** set a breakpoint in malloc_error_break to debug Done in 2.433 sec. dmri_mergepaths done #------------------------------------- trac-paths finished without error at Do 18 Aug 2011 11:39:42 CEST
This however does not seem to affect the pipeline, as all the expected outputs seem to be present and valid.
Dr. David Coynel Division of Cognitive Neuroscience
University of Basel Birmannsgasse 8 4055 Basel - Switzerland
david.coynel@unibas.ch tel: +41(0)612.670.240
Am 17.08.2011 um 23:44 schrieb Anastasia Yendiki:
Hi all - By popular demand we've posted the dmri_* executables compiled on snow leopard here: ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/macos-snow-leopard-intel/dmri_5.1_snow_leopard.tar.gz
This is not the entire FS distribution, just the commands that are called by trac-all. If you are a mac user with snow leopard and have been running into memory issues with the leopard version, you can download this, copy the new files into your $FREESURFER_HOME/bin, and try rerunning the part of the analysis that had errored out.
Let us know if there are any problems, a.y
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