Is the atlas in GCA format? If so, then you can use gca-apply
On 04/19/2018 10:09 AM, Ting Li wrote:
Hi Freesurfer Experts,
We want to run recon-all with a custom atlas which is generated from ANTs multivariate template construction. What is the right procedure to run recon-all? Run recon-all to my atlas itself first and them use this output as a template or I use the custom template directly. I looked up your email database to search related topic and got lost. I have sent another email to your group and no response received. Please help me.
Thanks for you time. I look forward to hearing from you.
Best, Ting
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