Hello I need separate grey and white volumes for the frontal and temporal lobes. I have values for grey volume from the following...
mri_annotation2label --subject 01 --hemi lh --lobesStrict lobar_annotation mris_anatomical_stats on the lh.lobar_annotation.annot file to generate a text file.
I've also run similar to the below and now have a text file wmparc.a2009.stats.
mri_aparc2aseg --s subject --labelwm --hypo-as-wm --rip-unknown --volmask --o mri/wmparc.a2009s.mgz --a2009s --ctxseg aparc.a2009s+aseg.mgz
mri_segstats --seg mri/wmparc.a2009s.mgz --sum stats/wmparc.a2009s.stats --pv mri/norm.mgz --excludeid 0 --brain-vol-from-seg --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject subject --surf-wm-vol --ctab $FREESURFER_HOME/WMParcStatsLUT.txt --etiv
Is there a standard list of labels in this file that are used to create the frontal and temporal lobes?
Thanks Trev
The University of Aberdeen is a charity registered in Scotland, No SC013683. Tha Oilthigh Obar Dheathain na charthannas cl?raichte ann an Alba, ?ir. SC013683.