Hello,
I want to run recon-all again on scans that have already been hand-edited, the appropriate recon-all flags ran, and resulting output checked and approved. The images look good, but when the hippocampal subfield routine was later run on the images, it crashed, leaving an error in the recon-all.log. We want to be anal, and make sure there is no error again after running recon-all. In other words, we want the last line in the recon-all.log to reflect that the images all completed successfully.
Is there a recommended flag (or flags) at this point? In other words, there are no additional edits to incorporate in the recon-all job, but we also don't want the earlier edits, control points, etc. ignored in this last rerun of recon-all.
Thank you for your help!
Stacey
Stacey M. Schaefer, Ph.D. Center for Healthy Minds
University of Wisconsin-Madison
625 W Washington Ave
Madison WI 53703
608-263-9321