[Freesurfer] Talairach transform

Dear list,

After fixing the Talairach transform automatically, (by mri_convert , the final objective funciton value is fine, ca.0.06) So I replaced the talairach.xfm with T1.xfm and named it as talairach.xfm, and it looked pretty fine with tkregister2. Then I runed recon-all -subjid xxxx -autorecon1 -notalairach, and then viewed it with tkmedit and tkreigister2. Under tkregister2 the talairach transform looks pretty good but not the target.(the oreientations of the target are totally mixed up, those of the moveble volume are correct).

I checked orig.mgz are also mixed up, coronal becomes sagittal, sagittal becomes horizontal, etc. Any suggestions about this ?

Thanks.

Jackie