Dear Nick
Is it possible to refer the "faces" I got with the command below to the labels from an annotation file?
[Macintosh-10:subjects/fsaverage_fineparc_uniformareas/surf] diana% mris_make_face_parcellation rh.inflated /Applications/freesurfer/lib/bem/ic4.tri rh.ic4.annot
I would like to run the following commands from the .annot file I generated with the mris_make_face_parcellation in order to get a txt-file with, for example, the cortical thickness information in each face:
mri_surf2surf mris_anatomical_stats aparcstats2table
With this procedure I would lose the precise site of a face and its associated anatomical label.
Thank you very much for your help! Diana
On Mon, 02 Mar 2009 14:44:54 -0500 Nick Schmansky nicks@nmr.mgh.harvard.edu wrote:
Jose,
mris_make_face_parcellation is here:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc
for three of the supported platforms.
Nick
On Mon, 2009-03-02 at 13:23 -0500, Bruce Fischl wrote:
Hi Jose,
this looks pretty much correct. We have another utility, called mris_make_face_parcellation that can be used to generate parcellation units of mostly uniform area over the surface of the cortex. If you tell us your hardware/software environment we can give you a beta.
cheers, Bruce
On Mon, 2 Mar 2009, Jose Luis Cantero Lorente wrote:
Dear Freesurfers,
We are trying to subdivide the cortical surface of our average subject
into a set of small and compact regions of similar area. Please have a look to the attached file (taken from Hagmann et al. (2008) in PLoS Biol) to have a better idea what I would like to get. We tried it hard by using different strategies, but results were not as expected. Could anybody give me some insights about how to approach this problem by using Freesurfer or Matlab code?
Thank you very much in advance.
Best, Jose
Jose Luis Cantero, Ph.D. Laboratory of Functional Neuroscience Department of Physiology, Anatomy, and Cellular Biology University Pablo de Olavide Ctra. de Utrera, Km.1 41013 - Sevilla
- Spain -
Phone: +34 954 977433 Fax: +34 954 349151 Email: jlcanlor@upo.es http://www.upo.es/neuroaging/es/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer