Did you check the volume to verify that at least one voxel has an index = 75 ?
On 3/19/16 10:43 AM, João V. Dornas wrote:
Dear friends,
I am following this procedures to plot a 3D rendering of the AAL volume (https://www.mail-archive.com/freesurfer%40nmr.mgh.harvard.edu/msg27707.html).
My problem is the following. When I execute this command:
*mri_cor2label --i lh.Colin27_aal2std.mgh --id 75 --l lh_Pallidum_L*
specifically for the ROI Pallidum, a subcortical ROI, I receive the following error
/$Id: mri_cor2label.c,v 1.12 2011/03/02 00:04:14 nicks Exp $/
/Loading mri lh.Colin27_aal2std.mgh/
/Loading /Applications/freesurfer/subjects/FS_spm_CanonicalBrain/surf/lh.white/
/Scanning the volume/
/Found 0 label voxels/
/ERROR: found no voxels matching id 75 /
This happens both for Pallidum Left and Pallidum Right, but all other AAL ROI work fine. I have an almost complete 3D rendering for my AAL. Only these subcortical regions are missing.
Someone knows what could be happening?
Thanks for the help.
best,
-- João V. Dornas Phd student in Neuroscience Cognitive Biology Group, Institute of Biology Otto von Guericke University, Magdeburg Germany
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