Hello,
I am doing a retinotopy study, and when I view the slices using the sliceview-sess command I obtain activation in the regions desired. However, when I view results on the flattened patches, activation is messed up. I tried running the tkmedit-sess command. tkmedit-sess -analysis rtopy -contrast h -map t -sf sessid -df sessdir and it gave me this error:
INFO: Found session in: /home/anisha87/freesurfer/subjects//ac1_ret grep: /home/anisha87/freesurfer/subjects//ac1_ret/session.info: No such file ordirectory INFO: Found session in: /home/anisha87/freesurfer/subjects//ac1_ret grep: /home/anisha87/freesurfer/subjects//ac1_ret/session.info: No such file ordirectory -------------------------------------------------------------- tkmedit-sess logfile is /home/anisha87/freesurfer/subjects/ac1_ret_study/log/tkmedit-sess.log -------------------------------------------------------------- setenv SUBJECTS_DIR /home/anisha87/freesurfer/subjects INFO: subject is ac1_anatomical INFO: subject is ac1_anatomical ------------------------ SUBJECTS_DIR /home/anisha87/freesurfer/subjects /home/anisha87/freesurfer/subjects/ac1_ret_study tkmedit ac1_anatomical orig -overlay /home/anisha87/freesurfer/subjects/ac1_ret/bold/rtopy/eccen/h_000.bfloat -overlay-reg /home/anisha87/freesurfer/subjects/ac1_ret/bold/register.dat -fthresh 2 -fmid 5 -fslope 1 ------------------------ *corRead(): can't open file /home/anisha87/freesurfer/subjects/ac1_anatomical/mri/orig/COR-.info * * Error: Loading volume orig*
Couldn't read the anatomical volume.
Tkmedit couldn't read the volume you specified. This could be because the image format wasn't recognized, or it couldn't find the proper header, or the file(s) were unreadable, or it was the wrong size.
tkmedit failed
The file located in.the direcotory orig is 001.mgz I can send it if needed. When I run tkmedit for MT localization study for the same subject, I get the same error.
Thank You